Name | PaML (yn00) | |
View | ![]() | |
Publication(s) | (A) Nei-Gojobori (1986) method
Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426
(B) Yang & Nielsen (2000) method
Yang Z, Nielsen R (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43
(C) LWL85, LPB93 & LWLm methods
Li W.-H., C.-I. Wu, Luo (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99
Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes - rates and interdependence between the genes. Mol. Biol. Evol. 10:271-281
Yang Z (2006) Computational Molecular Evolution. Oxford University Press, Oxford, England | |
Website | http://abacus.gene.ucl.ac.uk/software/paml.html | |
Description | Collection of various methods for estimating the numbers of synonymous and non-synonymous nucleotide substitutions. | |
Input (1) |
Alignment | |
Output (3) |
Results Text OutputText | |
Keywords (1) | Selective pressure   | |
Related (3) | PaML (baseml)  PaML (codeml)  PaML (Generate HTML)   | |
Sample workflow | PaMLyn00.properties.db |