Abdoulaye Baniré Diallo

Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
Ancestors 1.0: A Web Server For Ancestral Sequence Reconstruction
Bioinformatics, 2009

Mickael Leclercq, Abdoulaye Baniré Diallo, Mathieu Blanchette
Computational prediction of the localization of microRNAs within their pre-miRNA
Nucleic Acids Research, 2013

Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem
Journal of Computational Biology, 2007

Mathieu Blanchette, Abdoulaye Baniré Diallo, Eric D Green, Webb Miller, David Haussler
Computational Reconstruction of Ancestral DNA Sequences
Methods in Molecular Biology, 2008

Etienne Lord, Mickael Leclercq, Alix Boc, Abdoulaye Baniré Diallo, Vladimir Makarenkov
Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations
PLOS ONE, 2012

Vladimir Makarenkov

A Boc, Alpha B Diallo, V Makarenkov
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
Nucleic Acids Research 40 (W1), W573-W579.

V Makarenkov, P Legendre
Optimal Variable Weighting for Ultrametric and Additive Trees and K-means Partitioning: Methods and Software
Journal of Classification 18 (2), 245-271

P Legendre, V Makarenkov
Reconstruction of biogeographic and evolutionary networks using reticulograms
Systematic Biology 51 (2), 199-216

V Makarenkov, P Legendre
Nonlinear redundancy analysis and canonical correspondence analysis based on polynomial regression
Ecology 83 (4), 1146-1161

V Makarenkov, P Zentilli, D Kevorkov, A Gagarin, N Malo, R Nadon
An efficient method for the detection and elimination of systematic error in high-throughput screening
Bioinformatics 23 (13), 1648-1657

Vladimir Reinharz

J. Waldispühl et V. Reinharz
Modeling and Predicting RNA Three-Dimensional Structures
RNA Bioinformatics, Editor: Picardi, Ernsto, 2015

V. Reinharz, F. Major et J. Waldispühl
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure
In proceedings of the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Bioinformatics, 2012

V. Reinharz, Y. Ponty et J. Waldispühl
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs
In proceedings of the "Research in Computational Molecular Biology: 17th Annual International Conference, (RECOMB)", Lecture Notes in Computer Science (LNCS) volume 7821, 2013

V. Reinharz, Y. Ponty et J. Waldispühl
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces
Nucleic Acids Research, 2016

V. Reinharz, A. Soulé, E. Westhof, J. Waldispuhl et A. Denise
Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families
Nucleic Acids Research, 2018

Anne Bergerons

A Bergeron, J Mixtacki, J Stoye
A Unifying View of Genome Rearrangements
Genome, 2006

E Tanier, A Bergerons, M-F Sagot
Advances on sorting by reversals
Applied matematics, 2006

A Bergerons
A Very Elementary Presentation of the Hannenhalli-Pevzner Theory
Hannenhalli-Pevzner Theory, 2006

A Bergerons
Gene teams: a new formalization of gene clusters for comparative genomics
Gene Clusters, 2003

A Bergerons, C Chauve
Conservation of Combinatorial Structures in Evolution
Combinatorial Structures, 2007

Francois Oulette

F Ouellet, PJ Overvoorde, A Theologis
Biochemical Insight into an Auxin Mutant Phenotype
Biochemical Insight, 2001

F Ouellet, A Vazquez-Tello, F Sarhan
The wheat wcs120 promoter is cold‐inducible in both monocotyledonous and dicotyledonous species
The wheat wcs120, 1998

F Ouellet, É Carpentier, MJTV Cope, AF Monroy, F Sarhan
Regulation of a Wheat Actin-Depolymerizing Factor during Cold Acclimation
Regulation of a Wheat Actin-Depolymerizing, 2001

J-B Frenette Charron, F Ouellet, M Pelletier, J Danyluk, C Chauve, F Sarhan
Identification, Expression, and Evolutionary Analyses of Plant Lipocalins
Evolutionary Analyses of Plant Lipocalins, 2005

G Breton, J Danyluk, F Ouellet, F Sarhan
Biotechnological applications of plant freezing associated proteins
FBiotechnological applications, 2000

Steven Kembel

Steven W. Kembel,Peter D. Cowan, Matthew R. Helmus, William K. Cornwell,
Picante: R tools for integrating phylogenies and ecology
R tools, 2010

Steven W Kembel, Evan Jones, Jeff Kline, Dale Northcutt, Jason Stenson, Ann M Womack,
Architectural design influences the diversity and structure of the built environment microbiome
Architectural design, 2012

James, F.CahillJr, Steven Kembel, Eric G.Lamba Does phylogenetic relatedness influence the strength of competition among vascular plants?
Phylogenetic relatedness, 2007

Jeannine Cavender,Bares Kenneth H, Steven W. Kembel
The merging of community ecology and phylogenetic biology
Ecology and phylogenetic biology, 2009

Steven W. Kembel, James F. Cahill Jr.
Plant Phenotypic Plasticity Belowground: A Phylogenetic Perspective on Root Foraging Trade‐Offs
lant Phenotypic Plasticity, 2005

Mario Houde

Mario Houde, Arnaud Choke
Virus mediated overexpression using a novel BSMV
Virus mediated overexpression, 2018

Jean Danyluk, André Perron, Mario Houde, Allen Limin, Brian Fowler, Nicole Benhamou, Fathey Sarhan
Accumulation of an Acidic Dehydrin in the Vicinity of the Plasma Membrane during Cold Acclimation of Wheat
Accumulation of an Acidic Dehydrin, 1998

Golrock Kiani, AB Diallo, Engelbert Melphu
Immunolocalization of freezing tolerance associated proteins in the cytoplasm and nucleoplasm of wheat crown tissues
Immunolocalization of freezing tolerance, 1995

M J Ignatius, T H Large, M Houde, J W Tawil, A Barton, F Esch, S Carbonetto, L F Reichardt
Molecular cloning of the rat integrin alpha 1-subunit: a receptor for laminin and collagen.
Molecular cloning, 1990

France Allard, Mario Houde, Marianna Kröl, Alexander Ivanov, Norman P.A. Huner, Fathey Sarhan
Betaine Improves Freezing Tolerance in Wheat
Freezing Tolerance, 1998

Fathey Sarhan

François Ouellet, Alejandro Vazquez-Tello, Fathey Sarhan
The wheat wcs120 promoter is cold‐inducible in both monocotyledonous and dicotyledonous species
The wheat wcs120, 1998

François Ouellet, Éric Carpentier, M. Jamie T.V. Cope, Antonio F. Monroy, Fathey Sarhan
Regulation of a Wheat Actin-Depolymerizing Factor during Cold Acclimation
Regulation of a Wheat Actin-Depolymerizing, 2001

Jean-Benoit Frenette Charron, François Ouellet, Mélanie Pelletier, Jean Danyluk, Cédric Chauve, Fathey Sarhan
Identification, Expression, and Evolutionary Analyses of Plant Lipocalins
Evolutionary Analyses of Plant Lipocalins, 2005

France Allard, Mario Houde, Marianna Kröl, Alexander Ivanov, Norman P.A. Huner, Fathey Sarhan
Betaine Improves Freezing Tolerance in Wheat
Freezing Tolerance, 1998

Karim Oualkacha

Karim Oulkacha, Maxim Tugeon
Principal component of explained variance: An efficient and optimal data dimension reduction framework for association studies
An efficient and optimal data dimension reduction framework for association studies, 2016

Karim Oualkacha
The UK10K project identifies rare variants in health and disease
The UK10K project, 2015

Line Dufresne, Karim Oualkacha, Vincenzo Forgetta, Celia MT Greenwood
Pathway analysis for genetic association studies: to do, or not to do? That is the question
Pathway analysis, 2014

Abdallah Mkhadri,Mohamed Ouhourane, Karim Oualkacha
A coordinate descent algorithm for computing penalized smooth quantile regression
A coordinate descent algorithm for computing, 2016

Lai Jiang, Kaiqiong Zhao, Kathleen Klein, Angelo J. Canty, Karim Oualkacha Celia M. T. Greenwood
Investigating potential causal relationships between SNPs, DNA methylation and HDL
Causal relationships between SNPs, DNA2018